Bioconductor R package problem

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package installation compilation error r package problem shared libraries loading error

7.1 years ago Martin Maechler ▴ 330

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rbgl r package problem

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by ngs06 ▴ 20

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package development r package problem build/check error mmappr2

7.3 years ago Kyle Johnsen ▴ 30

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r package problem

updated 7.5 years ago by Mike Smith ★ 6.6k • written 7.5 years ago by hamedhm • 0

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r package problem

7.7 years ago rdpinho • 0

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r package problem

8.6 years ago Mohamad S. Hasan • 0

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package installation r package problem

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by sumudu_rangika ▴ 20

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software error r package problem

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by kkp7700 • 0

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R package problem

10.2 years ago zjzace • 0

9 results • Page 1 of 1

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Answer: Array weights in dpcDE by Gordon Smyth 53k

The uncertainty of quantification is fully accounted for in the dpcDE() analysis, including in the computation of sample weights. Your use…

Answer: lfc shrinkage estimator in DESeq2 by Michael Love 43k

Try the vignette which has a lot of information on these type of questions.

Comment: limpa analysis advice by Gordon Smyth 53k

The DPC slope is beta1. The estimated slopes for your data look pretty low, lower than I've ever used for a real dataset. Nevertheless, as …

Comment: limpa analysis advice by SamGG ▴ 360

Thanks for your feedback and for reassuring me. :-) As you suggested, I tried dpcCN() and set the slope to 0.7 in addition to the standard…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Good point, I hadn't considered the fact quantitative `time` implies a (logit-)linear response *to* time. You're correct that I haven't exp…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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